On Thursday, March 20th (with an optional pre-workshop session on March 19th), we are hosting a MZmine workshop at the Krč campus within our Inter-Micro OP JAK project.

MZmine is a powerful open-source tool for processing LC-MS/MS data, particularly well-suited for data from high-resolution MS instruments like Orbitrap and qTOF in untargeted metabolomics. The workshop is designed for both beginners and advanced users, though I especially recommend it for those currently working with or planning to process such data. If you're unsure whether the workshop is right for you, feel free to reach out.

The main workshop will take place on Thursday, March 20th (full-day, in person). Additionally, there will be a pre-workshop Zoom session on Wednesday, March 19th (13:00–14:15), covering metabolomics basics—recommended for beginners. Please indicate your attendance for this session in the registration form.

There are only 20 spots available so please do not hesitate with registration.

Location: Jagr Seminar Room, Institute of Molecular Genetics, Krč Campus – Vídeňská 1083, 142 20, Praha 4.
What to bring: Your laptop with MZmine 4.5.0 installed (see program for details)

Program is available here:

https://docs.google.com/…6hd

Register here:

https://docs.google.com/…orm

Kind regards,

Zdenek Kamenik

About the conference:
The international conference "3rd Food, Microbiota and Immunity" will take place from June 16-19, 2025 in Prague, Czech Republic. It is a small event designed to promote discussion, networking and knowledge transfer to a new generation of scientists. The conference venue is located in the historical building of Emmaus Abbey, so the number of participants is limited. It is intended as a friendly gathering of colleagues working in the field of immunology, microbiology and food research.

Registration is open at https://fmi2025.eu

We are excited to announce that the InterMicro project has established a community on Zenodo, the open-access repository for research outputs. This is a significant step towards enhancing the visibility and accessibility of our research findings and data.

Calling All Participants

We invite all project participants to contribute their research outputs to our Zenodo community. This includes:

• Research papers (electronic copies)
• Data sets
• Software tools
• Posters
• Presentations
• And many other relevant materials

By contributing, you will not only preserve your work, but also make it available to the global research community, fostering collaboration and innovation.

Follow Us on Zenodo

We also encourage everyone to follow our Zenodo community. By following, you'll stay updated with the latest contributions and developments from the InterMicro project.

1. Visit our InterMicro Zenodo Community.
2. Click on the "New upload" button and start contributing your work.
3. Become a member of the community and stay up-to-date about the scientific activity of other members.

Thank you for your continuous support and contributions. Let's work together to advance our research and share knowledge with the world!

For any questions or assistance, please contact our Data Steward Arzuv Caryjeva (arzuv.caryjeva@biomed.cas.cz)

A project-wide meeting with members of the International Scientific Advisory Board (ISAB) will take place in Telč on 14-15 October 2024. All scientists who are significantly involved in the ongoing activities of the project will give presentations in the form of lectures or posters. Further information will follow, please book this date in the meantime.

INTER MICRO Project Day

• When: February 8th, 2024
• Where: Leture hall, Institute of Physiology AS CR (Vídeňská 1083, Praha 4)
  ZOOM link: https://cesnet.zoom.us/j/94572898519

PROGRAM:

• KICK OFF meeting INTER MICRO
  • 9:00-9:15 General introduction (J. Jansa, T. Pěnek)
  • 9:15-9:25 Presentation of WP1 team and program (J. Kamanová)
  • 9:25-9:35 Presentation of WP2 team and program (F. Štěpánek)
  • 9:35-9:45 Presentation of WP3 team and program (M. Schwarzer)
  • 9:45 – 9:55 Presentation of WP4 team and program (P. Kohout)
  • 10:00 – 10:20 Cofee break
• SEQUENCING FROM A TO Z (LECTURES FOR PUBLIC IN CZECH)
  • 10:20 – 12:20 Sekvenační technologie – minulost, přítomnost, budoucnost (P. Vídeňská)
  • 12:20 – 13:15 oběd (lze využít dvě kantýny v areálu výzkumných ústavů v Krči)
  • 13:15 – 15:00  Výzkum mikrobiomu – jak postupovat a co je nového
  • 15:00 – 16:00 Panelová diskuse – problémy reproducibility a komparability sekvenačních projektů, nastavení pravidel v projektu OP JAK INTER-MICRO

We are delighted to announce the official launch of our ambitious project, INTER-MICRO - "Talking Microbes: Understanding Microbial Interactions within a One Health Framework," effective from January 1, 2024, and set to continue until June 30, 2028. This initiative aims to unravel the intricate world of microbial communication and its profound implications for One Health.

The project, coordinated by Jan Jansa, brings together esteemed institutions, including the Institute of Microbiology of the Czech Academy of Sciences, the University of Chemistry and Technology in Prague, and Charles University. Funded by the Ministry of Education, Youth and Health of the Czech Republic under the Programme Johannes Amos Comenius OP JAK, and co-financed by the European Union EU (the reference number CZ.02.01.01/00/22_008/0004597).

Project Goals:

1. To identify novel signalling molecules (i.e., the “words” in chemical cross-talk) involved in communication between prokaryotic microbes and/or microbes and their eukaryotic hosts.
2. To elucidate the mode of action of the previously established and novel signalling molecules, thus assembling the “sentences” and “messages”.
3. To successfully manipulate the eukaryotic-associative microbiome by changing the nutrient/energy inputs (diet), composition of starting microbiomes and by using the signalling molecules or their silencers, i.e. the “microbial language”.
4. To describe links between diet, associative microbiome and on-set and development of nutritional and health disorders in model eukaryotic hosts (e.g., fish, mouse, pig, soybean, mycorrhizal fungus).
5. To identify prokaryotic microbes, metabolic pathways and their regulation involved in the degradation of complex biomolecules or toxins of biological or industrial origin.
6. To describe ecosystem-wide microbiome shifts and their functional consequences in response to land use and global changes such as nutrient enrichment, drought, and biological invasions.

We are excited about the groundbreaking research ahead and the potential impact on our understanding of microbial interactions in various ecosystems. Regular updates on project milestones and findings will be shared on our website. Here's to the beginning of an enlightening journey into the fascinating realm of microbes!

We are thrilled to announce the successful Kick-off meeting of the INTER MICRO project, titled "Talking microbes – understanding microbial interactions within One Health framework" (INTER MICRO), which took place on September 12, 2023. This inaugural event marked the commencement of our collaborative effort under the OP JAK project. The INTER MICRO project is a multifaceted initiative involving various departments from three institutions. Given the complexity of the project, both in terms of scientific research and administrative support, we deemed it essential to create a positive and collaborative environment from the outset. The kick-off meeting was held at MBUCAS, providing a vibrant setting for the occasion. The event included a lively party house atmosphere and a delightful barbecue, bringing together scientists, students, and administrative professionals. This diverse group will be working together to address challenges in the field for the next four years, starting from January 1, 2024. Building a strong foundation of collaboration and camaraderie is crucial for the success of a project of this magnitude. The gathering allowed team members to connect, share ideas, and set a positive tone for the upcoming years. As we embark on this exciting journey, we look forward to sharing updates and milestones achieved during the INTER MICRO project. Regular progress reports will be posted on our website to keep our stakeholders informed and engaged. We extend our gratitude for the support received, and we are enthusiastic about the collective efforts that will lead to fruitful outcomes in the field. Stay tuned for more updates and information as we delve into the world of microbes and explore the possibilities of "Talking Microbes."